A B C D E F G H I L M N O P R S T U V W

A

addValues(String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange

atEOL() - Method in class au.csiro.netcdf.util.CSVTokenizer

ATTRIBUTE_DATA_TYPE - Static variable in class au.csiro.netcdf.NcDefineAttributes

The name of the command line option used for specifying the data type of the attribute.

ATTRIBUTES - Static variable in class au.csiro.netcdf.NcDefineAttributes

The name of the command line option used for specifying the attributes of a netCDF file.

au.csiro.netcdf - package au.csiro.netcdf

Provides a set of commands that allow the manipulation of netCDF files.

au.csiro.netcdf.cli - package au.csiro.netcdf.cli

Provides the command-line processing component of the netCDF conversion library.

au.csiro.netcdf.util - package au.csiro.netcdf.util

A collection of utilities used while working with netCDF files and data.

au.csiro.netcdf.wron - package au.csiro.netcdf.wron

B

buildCsvFilenamesForLatitudes(List<String>, List<CellData>, String, String) - Method in class au.csiro.netcdf.wron.ConversionUtils

C

calcDecadeKey(Integer, Date) - Method in class au.csiro.netcdf.wron.ConversionUtils

catchmentId - Variable in class au.csiro.netcdf.wron.CellData

CellData - Class in au.csiro.netcdf.wron

Class used to represent a row in a WRON lookup file.

CellData(String, String, String) - Constructor for class au.csiro.netcdf.wron.CellData

cellId - Variable in class au.csiro.netcdf.wron.CellData

COLUMN_INDEX - Static variable in class au.csiro.netcdf.NcCSVExtract

The name of the command line option used for specifying the index of the column.

Command - Interface in au.csiro.netcdf.cli

This interface represents the generic functionality of a netCDF Tools command.

CommandLineOptionsComparator - Class in au.csiro.netcdf.cli

This class implements the Comparator interface for comparing Options.

CommandLineOptionsComparator() - Constructor for class au.csiro.netcdf.cli.CommandLineOptionsComparator

compare(Option, Option) - Method in class au.csiro.netcdf.cli.CommandLineOptionsComparator

Compares its two arguments for order.

ConversionUtils - Class in au.csiro.netcdf.wron

A set of common processing used for conversion of MDB SY datasets from CSV to netCDF format.

ConversionUtils() - Constructor for class au.csiro.netcdf.wron.ConversionUtils

countTokens() - Method in class au.csiro.netcdf.util.CSVTokenizer

We have deliberately excluded the count token method as it would require caching.

createOptions() - Method in interface au.csiro.netcdf.cli.Command

Create the command line options for this command.

createOptions() - Method in class au.csiro.netcdf.NcCSVExtract

Create the command line options for this CSVExtract command.

createOptions() - Method in class au.csiro.netcdf.NcDefineAttributes

createOptions() - Method in class au.csiro.netcdf.NcDefineDimension

createOptions() - Method in class au.csiro.netcdf.NcDefineVariable

createOptions() - Method in class au.csiro.netcdf.NcWriteVariable

CSVTokenizer - Class in au.csiro.netcdf.util

Specialised StringTokenizer proxy to handle lines from a CSV file.

CSVTokenizer(String) - Constructor for class au.csiro.netcdf.util.CSVTokenizer

Constructs a CSV string tokenizer for the specified string.

CSVTokenizer(String, boolean) - Constructor for class au.csiro.netcdf.util.CSVTokenizer

Constructs a CSV string tokenizer for the specified string.

CSVTokenizer(String, char, boolean) - Constructor for class au.csiro.netcdf.util.CSVTokenizer

Constructs a CSV string tokenizer for the specified string.

D

daysBetween(Date, Date) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

daysBetween(Date, Date) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

debugOutput() - Method in class au.csiro.netcdf.wron.LongitudeRange

DIMENSION_NAME - Static variable in class au.csiro.netcdf.NcDefineDimension

The name of the command line option used for specifying the name of the dimension.

DIMENSION_NAMES - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the dimensions of the variable.

DIMENSION_SIZE - Static variable in class au.csiro.netcdf.NcDefineDimension

The name of the command line option used for specifying the size of the dimension.

E

elevation - Variable in class au.csiro.netcdf.wron.CellData

ENCODING - Static variable in class au.csiro.netcdf.wron.ConversionUtils

Encoding used to fill variables.

END_ROW - Static variable in class au.csiro.netcdf.NcCSVExtract

The name of the command line option used for specifying the end row.

execute(String[]) - Method in interface au.csiro.netcdf.cli.Command

Run the command.

execute(String[]) - Method in class au.csiro.netcdf.NcCSVExtract

Run the CSVExtract command.

execute(String[]) - Method in class au.csiro.netcdf.NcDefineAttributes

execute(String, List<Attribute>, boolean) - Method in class au.csiro.netcdf.NcDefineAttributes

Allows the command to be run programmatically, instead of from a command line.

execute(String, List<Attribute>, boolean, String) - Method in class au.csiro.netcdf.NcDefineAttributes

Allows the command to be run programmatically, instead of from a command line.

execute(String[]) - Method in class au.csiro.netcdf.NcDefineDimension

execute(String, String, int, boolean, boolean) - Method in class au.csiro.netcdf.NcDefineDimension

Allows the command to be run programmatically, instead of from a command line.

execute(String[]) - Method in class au.csiro.netcdf.NcDefineVariable

execute(File, String, DataType, List<Attribute>, String, boolean, boolean) - Method in class au.csiro.netcdf.NcDefineVariable

Allows the command to be run programmatically, instead of from a command line.

execute(String[]) - Method in class au.csiro.netcdf.NcWriteVariable

execute(File, String, String, InputStream, boolean) - Method in class au.csiro.netcdf.NcWriteVariable

Write data to a variable.

execute(String, String) - Method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

Performs the conversion.

EXTRACT_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcCSVExtract

The command name

F

fastFileLineCounter(String) - Static method in class au.csiro.netcdf.util.Util

Counts the number of lines in a file.

fileExists(String) - Static method in class au.csiro.netcdf.util.Util

Check if a file exists for a given file pathname.

filename - Variable in class au.csiro.netcdf.wron.CellData

FILENAME_PATTERN - Static variable in class au.csiro.netcdf.NcDefineAttributes

The pattern for accepted file names where multiple files are accepted.

FILENAME_PATTERN - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

The pattern for accepted file names where multiple files are accepted.

G

getAllColumns() - Method in class au.csiro.netcdf.util.CSVTokenizer

Returns all remaining columns for this tokenizer as a string.

getCalendar(Date) - Method in class au.csiro.netcdf.wron.ConversionUtils

Returns a suitable GregorianCalendar instance for use in date calculations.

getCellId() - Method in class au.csiro.netcdf.wron.CellData

getCommandName() - Method in interface au.csiro.netcdf.cli.Command

getCommandName() - Method in class au.csiro.netcdf.NcCSVExtract

getCommandName() - Method in class au.csiro.netcdf.NcDefineAttributes

getCommandName() - Method in class au.csiro.netcdf.NcDefineDimension

getCommandName() - Method in class au.csiro.netcdf.NcDefineVariable

getCommandName() - Method in class au.csiro.netcdf.NcWriteVariable

getDatesByDecade(List<String>) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

Groups dates, e.g.

getDatesByDecade(List<String>) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

Groups dates, e.g.

getEndLongitudeRange() - Method in class au.csiro.netcdf.wron.LongitudeRange

getExistingFile(String) - Static method in class au.csiro.netcdf.util.Util

Creates a new File instance from a given pathname string, if the given pathname string exists.

getFileExtension(String) - Static method in class au.csiro.netcdf.util.Util

Method to get the file extension as a String for the supplied file name.

getGoodZone() - Method in class au.csiro.netcdf.wron.ConversionUtils

returns a TimeZone with correct Sydney daylight saving regime - ie correct server timezone.

getLatitude() - Method in class au.csiro.netcdf.wron.CellData

getLatitudeBlock(Set<String>, int, int) - Method in class au.csiro.netcdf.wron.ConversionUtils

Retrieve the block of latitudes to be processed.

getLimitedLatitudes(Set<String>, String, String) - Method in class au.csiro.netcdf.wron.ConversionUtils

Retrieve the latitudes within the bounds provided.

getListOfTargetFiles(String, String) - Static method in class au.csiro.netcdf.util.Util

Retrieve a list of the absolute path names of the files in a folder that match a pattern.

getLongitude() - Method in class au.csiro.netcdf.wron.CellData

getMemDisplay() - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

getMemDisplay() - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

getNetCDF3DataTypes() - Static method in class au.csiro.netcdf.NcDefineVariable

getNumLongitudes() - Method in class au.csiro.netcdf.wron.LongitudeRange

getNumVariables() - Method in class au.csiro.netcdf.wron.LongitudeRange

getStartLongitudeRange() - Method in class au.csiro.netcdf.wron.LongitudeRange

getUsageString() - Method in interface au.csiro.netcdf.cli.Command

getUsageString() - Method in class au.csiro.netcdf.NcCSVExtract

getUsageString() - Method in class au.csiro.netcdf.NcDefineAttributes

getUsageString() - Method in class au.csiro.netcdf.NcDefineDimension

getUsageString() - Method in class au.csiro.netcdf.NcDefineVariable

getUsageString() - Method in class au.csiro.netcdf.NcWriteVariable

getValues(int) - Method in class au.csiro.netcdf.wron.LongitudeRange

Retrieve the values for a particular variable as a string of one value per line.

H

hasMoreElements() - Method in class au.csiro.netcdf.util.CSVTokenizer

hasMoreTokens() - Method in class au.csiro.netcdf.util.CSVTokenizer

I

INPUT_DIR - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

The name of the command line option used for specifying the input directory containing the netCDF files.

INPUT_FILE - Static variable in class au.csiro.netcdf.NcCSVExtract

The name of the command line option used for specifying the input csv file name.

INPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes

The name of the command line option used for specifying the input text file name.

INPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the input text file name.

IS_FILL_VARIABLE - Static variable in class au.csiro.netcdf.NcDefineVariable

Ensure that any variable value not written will have the fill value, otherwise those values will be undefined: possibly zero, or possibly garbage.

IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes

Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.

IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineDimension

Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.

IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable

Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.

L

latitude - Variable in class au.csiro.netcdf.wron.CellData

longitude - Variable in class au.csiro.netcdf.wron.CellData

LongitudeRange - Class in au.csiro.netcdf.wron

Represents a range of longitude values for some variables.

LongitudeRange(int, int, String[]) - Constructor for class au.csiro.netcdf.wron.LongitudeRange

Create a new longitude range.

lookupIndex(NetcdfFile, Dimension, String) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Lookup the index of a value in a dimension.

M

main(String[]) - Static method in class au.csiro.netcdf.cli.NetCDFTool

NetCDFTool application starting point.

main(String[]) - Static method in class au.csiro.netcdf.cli.ProduceUsageDoc

Produce the USAGE.txt document.

main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

Command line entry point for the MdbsyNetCDF2CSVConverter class.

main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

mapStringToAttributeValueList(String) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Converts a comma separated String into a String Attribute list.

mapStringToAttributeValueList(String, DataType) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Converts a comma separated String into an Attribute list.

mapStringToDataType(String) - Static method in class au.csiro.netcdf.NcDefineAttributes

Maps a String into a DataType.

MAX_32BIT_OFFSET_FILE_SIZE - Static variable in interface au.csiro.netcdf.cli.Command

The maximum file size, in bytes, before a 64-bit file offset is required.

MdbsyNetCDF2CSVConverter - Class in au.csiro.netcdf.wron

The class is a converter control class to convert Murray Darling Basin Sustainable Yields netCDF files into CSV files.

MdbsyNetCDF2CSVConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

MdbsyScenarioAConverter - Class in au.csiro.netcdf.wron

The class is a converter control class to convert Murray Darling Basin Sustainable Yields CSV files into netCDF files.

MdbsyScenarioAConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyScenarioAConverter

MdbsyScenarioAConverter.CellDataVariable - Enum in au.csiro.netcdf.wron

MdbsyScenarioCConverter - Class in au.csiro.netcdf.wron

The class is a converter control class to convert Murray Darling Basin Sustainable Yields CSV files into netCDF files.

MdbsyScenarioCConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyScenarioCConverter

MdbsyScenarioCConverter.CellDataVariable - Enum in au.csiro.netcdf.wron

N

NC_DEFINE_ATT_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineAttributes

The command name

NC_DEFINE_DIM_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineDimension

The command name

NC_DEFINE_VAR_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineVariable

The command name

NC_WRITE_VAR_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcWriteVariable

The command name

NcCSVExtract - Class in au.csiro.netcdf

The ncextractcsv command reads a specified column of data from a comma separated file and then writes this column to standard output.

NcCSVExtract() - Constructor for class au.csiro.netcdf.NcCSVExtract

Constructor

NcDefineAttributes - Class in au.csiro.netcdf

The ncdefineAtt command defines global or variable Attributes in a netCDF file.

NcDefineAttributes() - Constructor for class au.csiro.netcdf.NcDefineAttributes

Constructor

NcDefineDimension - Class in au.csiro.netcdf

The ncdefineDim command defines a Dimension in a netCDF file.

NcDefineDimension() - Constructor for class au.csiro.netcdf.NcDefineDimension

Constructor

NcDefineVariable - Class in au.csiro.netcdf

The ncdefineVar command defines a Variable object in a netCDF file.

NcDefineVariable() - Constructor for class au.csiro.netcdf.NcDefineVariable

Constructor

NcWriteVariable - Class in au.csiro.netcdf

The ncwriteVar command writes a specified portion of data to a Variable object in a netCDF file.

NcWriteVariable() - Constructor for class au.csiro.netcdf.NcWriteVariable

Default constructor.

NetCDFTool - Class in au.csiro.netcdf.cli

This is the main interface for the NetCDF Tool command line application.

NetCDFTool() - Constructor for class au.csiro.netcdf.cli.NetCDFTool

NetCDFUtils - Class in au.csiro.netcdf.util

A collection of netCDF specific utility functions.

NetCDFUtils() - Constructor for class au.csiro.netcdf.util.NetCDFUtils

nextElement() - Method in class au.csiro.netcdf.util.CSVTokenizer

nextToken() - Method in class au.csiro.netcdf.util.CSVTokenizer

NOT_FOUND - Static variable in class au.csiro.netcdf.util.NetCDFUtils

Index value to be returned when the value cannot be found in the array

NULL_VALUE - Static variable in class au.csiro.netcdf.util.NetCDFUtils

O

OUTPUT_DIR - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

The name of the command line option used for specifying the directory to create the csv files in.

OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes

The name of the command line option used for specifying the output netCDF file name.

OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineDimension

The name of the command line option used for specifying the output netCDF file name.

OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the output netCDF file name.

P

PRINT_WIDTH - Static variable in interface au.csiro.netcdf.cli.Command

The column width for printing helps and usage statements.

ProduceUsageDoc - Class in au.csiro.netcdf.cli

Produce a document with the usage instructions of the known commands.

ProduceUsageDoc() - Constructor for class au.csiro.netcdf.cli.ProduceUsageDoc

putValues(int, String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange

putValues(String, String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange

R

readAttributesFromStream(InputStream) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Converts an input stream into an Attribute list.

readDataByLatitudes(List<CellData>, List<String>, int, int, int, String[], String) - Method in class au.csiro.netcdf.wron.ConversionUtils

Read in the data from the CSV files.

readLookupFile(File) - Static method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter

Parses a csv file into an row-by-column string matrix.

reportingRegionId - Variable in class au.csiro.netcdf.wron.CellData

S

searchCharArray(Array, Character) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Search a netCDF Array containing character values stored in ascending order, i.e.

searchFloatingPointArray(Array, double, double) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Search a netCDF Array containing floating point numeric values (double, float) stored in ascending order.

searchIntegralArray(Array, long) - Static method in class au.csiro.netcdf.util.NetCDFUtils

Search a netCDF Array containing integer numeric values (int, long, short, byte) stored in ascending order.

setNetCDF3DataTypes(Set<DataType>) - Static method in class au.csiro.netcdf.NcDefineVariable

setStartLongitudeRange(String) - Method in class au.csiro.netcdf.wron.LongitudeRange

splitByDecade(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

Splits a directory of WRON csv files into corresponding netCDF files that are grouped by decade.

splitByDecade(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

Splits a directory of WRON csv files into corresponding netCDF files that are grouped by decade.

splitByLatitude(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter

Splits a directory of WRON csv files into corresponding netCDF files that are grouped by degrees of latitude.

splitByLatitude(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter

Splits a directory of WRON csv files into corresponding netCDF files that are grouped by degrees of latitude.

splitOnNonBackslashedCharacter(String, String) - Static method in class au.csiro.netcdf.util.Util

Splits the given string around matches of the given non-backslashed regular expression.

START_ROW - Static variable in class au.csiro.netcdf.NcCSVExtract

The name of the command line option used for specifying the start row.

T

tokeniseCommaSeparatedString(String) - Static method in class au.csiro.netcdf.util.Util

Splits a comma separated String into a List of tokens.

toString() - Method in class au.csiro.netcdf.NcDefineAttributes

toString() - Method in class au.csiro.netcdf.NcDefineDimension

toString() - Method in class au.csiro.netcdf.NcDefineVariable

toString() - Method in class au.csiro.netcdf.NcWriteVariable

toString() - Method in class au.csiro.netcdf.wron.CellData

U

Util - Class in au.csiro.netcdf.util

Util - utility class with various helpful tools...

Util() - Constructor for class au.csiro.netcdf.util.Util

V

validateNumber(String) - Static method in class au.csiro.netcdf.util.Util

Check if a string contains a valid number

validCommand(String[]) - Method in interface au.csiro.netcdf.cli.Command

Determine if this command is valid, check its syntax.

validCommand(String[]) - Method in class au.csiro.netcdf.NcCSVExtract

Determine if this command is valid, check its syntax.

validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineAttributes

Determine if this command is valid, check its syntax.

validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineDimension

Determine if this command is valid, check its syntax.

validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineVariable

validCommand(String[]) - Method in class au.csiro.netcdf.NcWriteVariable

valueOf(String) - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioAConverter.CellDataVariable

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioCConverter.CellDataVariable

Returns the enum constant of this type with the specified name.

values() - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioAConverter.CellDataVariable

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioCConverter.CellDataVariable

Returns an array containing the constants of this enum type, in the order they are declared.

VARIABLE_ATTRIBUTES - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the attributes of the variable.

VARIABLE_DATA_TYPE - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the data type of the variable.

VARIABLE_NAME - Static variable in class au.csiro.netcdf.NcDefineAttributes

The name of the command line option used for specifying the name of the variable receiving the attributes.

VARIABLE_NAME - Static variable in class au.csiro.netcdf.NcDefineVariable

The name of the command line option used for specifying the name of the variable.

W

writeLatDataByDecade(Map<Integer, Map<String, LongitudeRange>>, Map<Integer, String[]>, String[], Date) - Method in class au.csiro.netcdf.wron.ConversionUtils

Write out the data for each variable.

A B C D E F G H I L M N O P R S T U V W