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A

au.csiro.netcdf - package au.csiro.netcdf

Provides a set of commands that allow the manipulation of netCDF files.

au.csiro.netcdf.util - package au.csiro.netcdf.util

A collection of utilities used while working with netCDF files and data.

au.csiro.netcdf.wron - package au.csiro.netcdf.wron

C

computeTestDataRoot(Class) - Static method in class au.csiro.netcdf.wron.ConversionUtilsTest

ConversionUtilsTest - Class in au.csiro.netcdf.wron

Verify the function of the ConversionUtils functions Copyright 2010, CSIRO Australia All rights reserved.

ConversionUtilsTest() - Constructor for class au.csiro.netcdf.wron.ConversionUtilsTest

CreateFile - Class in au.csiro.netcdf

CreateFile() - Constructor for class au.csiro.netcdf.CreateFile

CSVTokenizerTest - Class in au.csiro.netcdf.util

Verify that CSVTokenizer is working correctly Copyright 2010, CSIRO Australia All rights reserved.

CSVTokenizerTest() - Constructor for class au.csiro.netcdf.util.CSVTokenizerTest

M

main(String[]) - Static method in class au.csiro.netcdf.CreateFile

N

NetCDFToolTest - Class in au.csiro.netcdf

This class is a unit test suite to verify that the netCDF commands operate correctly.

NetCDFToolTest(String) - Constructor for class au.csiro.netcdf.NetCDFToolTest

Create the test case

NetCDFUtilsTest - Class in au.csiro.netcdf.util

Check the function of the NetCDFUtils class.

NetCDFUtilsTest() - Constructor for class au.csiro.netcdf.util.NetCDFUtilsTest

S

setUp() - Method in class au.csiro.netcdf.TestCommandLineRunner

setUp() - Method in class au.csiro.netcdf.TestExtractCommand

setUp() - Method in class au.csiro.netcdf.TestNcDefineAttributes

setUp() - Method in class au.csiro.netcdf.TestNcDefineDimension

setUp() - Method in class au.csiro.netcdf.TestNcDefineVariable

setUp() - Method in class au.csiro.netcdf.TestNcWriteVariable

setUp() - Method in class au.csiro.netcdf.util.CSVTokenizerTest

setUp() - Method in class au.csiro.netcdf.util.NetCDFUtilsTest

setUp() - Method in class au.csiro.netcdf.util.UtilTest

setUp() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

setUp() - Method in class au.csiro.netcdf.wron.TestMdbsyNetCDF2CSVConverter

status - Variable in exception au.csiro.netcdf.TestCommandLineRunner.ExitException

suite() - Static method in class au.csiro.netcdf.NetCDFToolTest

T

tearDown() - Method in class au.csiro.netcdf.TestCommandLineRunner

tearDown() - Method in class au.csiro.netcdf.TestExtractCommand

tearDown() - Method in class au.csiro.netcdf.TestNcDefineAttributes

tearDown() - Method in class au.csiro.netcdf.TestNcDefineDimension

tearDown() - Method in class au.csiro.netcdf.TestNcDefineVariable

tearDown() - Method in class au.csiro.netcdf.TestNcWriteVariable

tearDown() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

tearDown() - Method in class au.csiro.netcdf.wron.TestMdbsyNetCDF2CSVConverter

testBuildCsvFilenamesForLatitudes() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

Test method for au.csiro.netcdf.wron.ConversionUtils#buildCsvFilenamesForLatitudes(java.util.List, java.util.List).

TestCommandLineRunner - Class in au.csiro.netcdf

This class is a unit test suite to verify that the NetCDFTool operates correctly.

TestCommandLineRunner() - Constructor for class au.csiro.netcdf.TestCommandLineRunner

TestCommandLineRunner.ExitException - Exception in au.csiro.netcdf

Exit exception used for catching system exits.

TestCommandLineRunner.ExitException(int) - Constructor for exception au.csiro.netcdf.TestCommandLineRunner.ExitException

testCommandName() - Method in class au.csiro.netcdf.TestNcDefineVariable

Make sure that the correct command name comes back.

testConvertStringsToRanges() - Method in class au.csiro.netcdf.TestNcWriteVariable

Check that the convertStringsToRanges copes with ranges and single values.

testConvertStringsWithSpacesToRanges() - Method in class au.csiro.netcdf.TestNcWriteVariable

Check that the convertStringsToRanges copes with strings with spaces.

testCreateOptions() - Method in class au.csiro.netcdf.TestExtractCommand

Test that the commands options are used.

testCreateOptions() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test that the commands options are used.

testCreateOptions() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test that the commands options are used.

testCreateOptions() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test that the commands options are used.

testCreateOptions() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test that the commands options are used.

testCreateOriginListSingle() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test the creation of an origin list for a single range

testCreateOriginListThreeRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test the creation of an origin list for a three dimension range

testCreateOriginListTwoRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test the creation of an origin list for a two dimension range

testDeleteGlobalAttribute() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test delete a global attribute

testDeleteVariableAttribute() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test delete a variable attribute

testDelimiterNotReturned() - Method in class au.csiro.netcdf.util.CSVTokenizerTest

testDelimiterReturned() - Method in class au.csiro.netcdf.util.CSVTokenizerTest

testExecute() - Method in class au.csiro.netcdf.TestNcWriteVariable

testExecuteCmdWithExistingFile() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test execute command with an existing file

testExecuteExistingFile() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with the specified Dimension name and size

testExecuteInvalidType() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with an integer attribute

testExecuteNoAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with the specified Dimension name and size

testExecuteValidCommand() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test a valid command creates a netCDF file with the specified Dimension name and size

testExecuteValidCommand() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid NcWriteVariable command

testExecuteValidCommandwithDoubleVar() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid NcWriteVariable command using Double datatype

testExecuteValidCommandwithIntVar() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid NcWriteVariable command using Long datatype

testExecuteValidFloatAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with a float attribute

testExecuteValidIntAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with an integer attribute

testExecuteValidMultiAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with the specified Dimension name and size

testExecuteValidShortAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test a valid command creates a netCDF file with a short attribute

testExecuteWithValidIuputFile() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test command execution with a valid input file

TestExtractCommand - Class in au.csiro.netcdf

This class is a unit test suite to verify that the Extract command operates correctly.

TestExtractCommand() - Constructor for class au.csiro.netcdf.TestExtractCommand

testFillInvalidRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute command by providing incorrect fillRange

testFillValidRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test validate command with a valid fillRange

testFillVar() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test that fillVar being set to true pads the variable with the fillVar value.

testGetLatitudeBlock() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

Test method for ConversionUtils.getLatitudeBlock(java.util.Set, int, int).

testGetLimitedLatitudes() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

testGetListOfTargetFiles() - Method in class au.csiro.netcdf.util.UtilTest

Test method for Util.getListOfTargetFiles(java.lang.String, java.lang.String).

testGetListOfTargetFilesEscaped() - Method in class au.csiro.netcdf.util.UtilTest

Test method for Util.getListOfTargetFiles(java.lang.String, java.lang.String).

testGetUsage() - Method in class au.csiro.netcdf.TestExtractCommand

Test that the command's toString(0 displays the command's command name.

testGetUsage() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test the command's usage string

testGetUsage() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test the command's usage string

testIllegalCreateOptions() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test that the commands options are used only when valid.

testInvalidAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test that an invalid attribute is rejected

testInvalidColumnIndex() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an invalid column index.

testInvalidColumnIndexArgValue() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an invalid column index argument value.

testInvalidEndRowIndexArgValue() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an invalid end row argument value.

testInvalidInputFileExtension() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given a file with the wrong file extension.

testInvalidOptionType() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test invalid fillRange option

testInvalidRowIndexRange() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an invalid row index range.

testInvalidSizeOption() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test invalid dimension size

testInvalidStartRowIndexArgValue() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an invalid start row argument value.

testInvalidVariableAttributesInExecuteCommand() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test invalid variableAttributes argument.

testLookupRangeChar() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid character range lookup

testLookupRangeIntegral() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid integral range lookup

testLookupRangeNumeric() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid numeric range lookup

testMainMethodInvalidCommand() - Method in class au.csiro.netcdf.TestCommandLineRunner

Test execution of the main method with an invalid command.

testMainMethodValidCommandInvalidArgs() - Method in class au.csiro.netcdf.TestCommandLineRunner

Test execution of the main method with a valid command but with invalid arguments.

testMainMethodValidCommandValidArgsInvalidContents() - Method in class au.csiro.netcdf.TestCommandLineRunner

Test execution of the main method with a valid command and valid arguments but invalid contents.

TestMdbsyNetCDF2CSVConverter - Class in au.csiro.netcdf.wron

This class is a unit test suite to verify that the MdbsyNetCDF2CSVConverter operates correctly.

TestMdbsyNetCDF2CSVConverter() - Constructor for class au.csiro.netcdf.wron.TestMdbsyNetCDF2CSVConverter

testMismatchedFillRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute with a number of entries in fillrange that does not match the variables dimensions

testMissingAttr() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test that a missing optional attribute is accepted

testMissingDimSizeOption() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test missing optional Dimension Size option

testMissingOutputFileNameInExecuteCommand() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test missing outputFileName argument.

testMissingRequiredOption() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test that required options are reported if missing

testMissingRequiredOption() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test required option

testMissingRequiredOption() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test required arguments option

testMissingRequiredOption() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test required option

testMultipleUnlimitedDimSize() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test Dimension size is set to unlimited

TestNcDefineAttributes - Class in au.csiro.netcdf

This class is a unit test suite to verify that the NcDefineAttributes command operates correctly.

TestNcDefineAttributes() - Constructor for class au.csiro.netcdf.TestNcDefineAttributes

TestNcDefineDimension - Class in au.csiro.netcdf

This class is a unit test suite to verify that the NcDefineDimension command operates correctly.

TestNcDefineDimension() - Constructor for class au.csiro.netcdf.TestNcDefineDimension

TestNcDefineVariable - Class in au.csiro.netcdf

This class is a unit test suite to verify that the NcDefineVariable command operates correctly.

TestNcDefineVariable() - Constructor for class au.csiro.netcdf.TestNcDefineVariable

TestNcWriteVariable - Class in au.csiro.netcdf

This class is a unit test suite to verify that the NcDefineDimension command operates correctly.

TestNcWriteVariable() - Constructor for class au.csiro.netcdf.TestNcWriteVariable

testNetCDF2CSVConversion() - Method in class au.csiro.netcdf.wron.TestMdbsyNetCDF2CSVConverter

Test execute a valid NcWriteVariable command using Double datatype

testNonExistentInputFile() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given a non-existent file name.

testNonExistentOutputFileNameInExecuteCommand() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test a non-existent outputFileName argument.

testReadAttributesFromStream() - Method in class au.csiro.netcdf.util.NetCDFUtilsTest

Test method for NetCDFUtils.readAttributesFromStream(java.io.InputStream).

testReadAttributesFromStreamNull() - Method in class au.csiro.netcdf.util.NetCDFUtilsTest

Test method for NetCDFUtils.readAttributesFromStream(java.io.InputStream).

testReadDataByLatitudesNoFiles() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

Test method for au.csiro.netcdf.wron.ConversionUtils#readDataByLatitudes(java.util.List, java.util.List, java.util.List, int) .

testReadDataByLatitudesWithFiles() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

Test method for au.csiro.netcdf.wron.ConversionUtils#readDataByLatitudes(java.util.List, java.util.List, java.util.List, int) .

testReadDataByLatitudesWithPartialCoverage() - Method in class au.csiro.netcdf.wron.ConversionUtilsTest

testSplitRange() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test the splitRange function can cope with negative lookups

testStandardInputAttribute() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test setting global attribute via standard input

testStandardInputComplexAttribute() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test setting a complex global attribute via standard input

testStandardInputComplexAttribute() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test setting a complex global attribute via standard input

testThreeDimNCVariable() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test create a Variable with three Dimensions

testUnlimitedDimSize() - Method in class au.csiro.netcdf.TestNcDefineDimension

Test Dimension size is set to unlimited

testValidColumnIndex() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given a valid column index.

testValidCommand() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test a valid command creates a netCDF file with the specified Variable name

testValidIuputFileName() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test validate command with valid and invalid file names

testValidRowIndexRange() - Method in class au.csiro.netcdf.TestExtractCommand

Test running extract given an valid row index range.

testValidVariableAttributesInExecuteCommand() - Method in class au.csiro.netcdf.TestNcDefineVariable

Test valid variableAttributes argument.

testVariableAttribute() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test adding attributes to an existing variable

testVariableAttributeNoVar() - Method in class au.csiro.netcdf.TestNcDefineAttributes

Test adding attributes to a non-existing variable

testWriteDataBinary() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test execute a valid integral range lookup

testWriteToInvalidVariable() - Method in class au.csiro.netcdf.TestNcWriteVariable

Test running command given an invalid Variable name.

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UtilTest - Class in au.csiro.netcdf.util

Check the function of the Util class.

UtilTest() - Constructor for class au.csiro.netcdf.util.UtilTest

V

VARIABLE_ATTRIBUTES - Static variable in class au.csiro.netcdf.TestNcDefineVariable

The name of the command line option used for specifying the attributes of the variable.

A C M N S T U V