A B C D E F G H I L M N O P R S T U V W

A

addValues(String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange
 
atEOL() - Method in class au.csiro.netcdf.util.CSVTokenizer
 
ATTRIBUTE_DATA_TYPE - Static variable in class au.csiro.netcdf.NcDefineAttributes
The name of the command line option used for specifying the data type of the attribute.
ATTRIBUTES - Static variable in class au.csiro.netcdf.NcDefineAttributes
The name of the command line option used for specifying the attributes of a netCDF file.
au.csiro.netcdf - package au.csiro.netcdf
Provides a set of commands that allow the manipulation of netCDF files.
au.csiro.netcdf.cli - package au.csiro.netcdf.cli
Provides the command-line processing component of the netCDF conversion library.
au.csiro.netcdf.util - package au.csiro.netcdf.util
A collection of utilities used while working with netCDF files and data.
au.csiro.netcdf.wron - package au.csiro.netcdf.wron
 

B

buildCsvFilenamesForLatitudes(List<String>, List<CellData>, String, String) - Method in class au.csiro.netcdf.wron.ConversionUtils
 

C

calcDecadeKey(Integer, Date) - Method in class au.csiro.netcdf.wron.ConversionUtils
 
catchmentId - Variable in class au.csiro.netcdf.wron.CellData
 
CellData - Class in au.csiro.netcdf.wron
Class used to represent a row in a WRON lookup file.
CellData(String, String, String) - Constructor for class au.csiro.netcdf.wron.CellData
 
cellId - Variable in class au.csiro.netcdf.wron.CellData
 
COLUMN_INDEX - Static variable in class au.csiro.netcdf.NcCSVExtract
The name of the command line option used for specifying the index of the column.
Command - Interface in au.csiro.netcdf.cli
This interface represents the generic functionality of a netCDF Tools command.
CommandLineOptionsComparator - Class in au.csiro.netcdf.cli
This class implements the Comparator interface for comparing Options.
CommandLineOptionsComparator() - Constructor for class au.csiro.netcdf.cli.CommandLineOptionsComparator
 
compare(Option, Option) - Method in class au.csiro.netcdf.cli.CommandLineOptionsComparator
Compares its two arguments for order.
ConversionUtils - Class in au.csiro.netcdf.wron
A set of common processing used for conversion of MDB SY datasets from CSV to netCDF format.
ConversionUtils() - Constructor for class au.csiro.netcdf.wron.ConversionUtils
 
countTokens() - Method in class au.csiro.netcdf.util.CSVTokenizer
We have deliberately excluded the count token method as it would require caching.
createOptions() - Method in interface au.csiro.netcdf.cli.Command
Create the command line options for this command.
createOptions() - Method in class au.csiro.netcdf.NcCSVExtract
Create the command line options for this CSVExtract command.
createOptions() - Method in class au.csiro.netcdf.NcDefineAttributes
 
createOptions() - Method in class au.csiro.netcdf.NcDefineDimension
 
createOptions() - Method in class au.csiro.netcdf.NcDefineVariable
 
createOptions() - Method in class au.csiro.netcdf.NcWriteVariable
 
CSVTokenizer - Class in au.csiro.netcdf.util
Specialised StringTokenizer proxy to handle lines from a CSV file.
CSVTokenizer(String) - Constructor for class au.csiro.netcdf.util.CSVTokenizer
Constructs a CSV string tokenizer for the specified string.
CSVTokenizer(String, boolean) - Constructor for class au.csiro.netcdf.util.CSVTokenizer
Constructs a CSV string tokenizer for the specified string.
CSVTokenizer(String, char, boolean) - Constructor for class au.csiro.netcdf.util.CSVTokenizer
Constructs a CSV string tokenizer for the specified string.

D

daysBetween(Date, Date) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
 
daysBetween(Date, Date) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
 
debugOutput() - Method in class au.csiro.netcdf.wron.LongitudeRange
 
DIMENSION_NAME - Static variable in class au.csiro.netcdf.NcDefineDimension
The name of the command line option used for specifying the name of the dimension.
DIMENSION_NAMES - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the dimensions of the variable.
DIMENSION_SIZE - Static variable in class au.csiro.netcdf.NcDefineDimension
The name of the command line option used for specifying the size of the dimension.

E

elevation - Variable in class au.csiro.netcdf.wron.CellData
 
ENCODING - Static variable in class au.csiro.netcdf.wron.ConversionUtils
Encoding used to fill variables.
END_ROW - Static variable in class au.csiro.netcdf.NcCSVExtract
The name of the command line option used for specifying the end row.
execute(String[]) - Method in interface au.csiro.netcdf.cli.Command
Run the command.
execute(String[]) - Method in class au.csiro.netcdf.NcCSVExtract
Run the CSVExtract command.
execute(String[]) - Method in class au.csiro.netcdf.NcDefineAttributes
 
execute(String, List<Attribute>, boolean) - Method in class au.csiro.netcdf.NcDefineAttributes
Allows the command to be run programmatically, instead of from a command line.
execute(String, List<Attribute>, boolean, String) - Method in class au.csiro.netcdf.NcDefineAttributes
Allows the command to be run programmatically, instead of from a command line.
execute(String[]) - Method in class au.csiro.netcdf.NcDefineDimension
 
execute(String, String, int, boolean, boolean) - Method in class au.csiro.netcdf.NcDefineDimension
Allows the command to be run programmatically, instead of from a command line.
execute(String[]) - Method in class au.csiro.netcdf.NcDefineVariable
 
execute(File, String, DataType, List<Attribute>, String, boolean, boolean) - Method in class au.csiro.netcdf.NcDefineVariable
Allows the command to be run programmatically, instead of from a command line.
execute(String[]) - Method in class au.csiro.netcdf.NcWriteVariable
 
execute(File, String, String, InputStream, boolean) - Method in class au.csiro.netcdf.NcWriteVariable
Write data to a variable.
execute(String, String) - Method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
Performs the conversion.
EXTRACT_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcCSVExtract
The command name

F

fastFileLineCounter(String) - Static method in class au.csiro.netcdf.util.Util
Counts the number of lines in a file.
fileExists(String) - Static method in class au.csiro.netcdf.util.Util
Check if a file exists for a given file pathname.
filename - Variable in class au.csiro.netcdf.wron.CellData
 
FILENAME_PATTERN - Static variable in class au.csiro.netcdf.NcDefineAttributes
The pattern for accepted file names where multiple files are accepted.
FILENAME_PATTERN - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
The pattern for accepted file names where multiple files are accepted.

G

getAllColumns() - Method in class au.csiro.netcdf.util.CSVTokenizer
Returns all remaining columns for this tokenizer as a string.
getCalendar(Date) - Method in class au.csiro.netcdf.wron.ConversionUtils
Returns a suitable GregorianCalendar instance for use in date calculations.
getCellId() - Method in class au.csiro.netcdf.wron.CellData
 
getCommandName() - Method in interface au.csiro.netcdf.cli.Command
 
getCommandName() - Method in class au.csiro.netcdf.NcCSVExtract
 
getCommandName() - Method in class au.csiro.netcdf.NcDefineAttributes
 
getCommandName() - Method in class au.csiro.netcdf.NcDefineDimension
 
getCommandName() - Method in class au.csiro.netcdf.NcDefineVariable
 
getCommandName() - Method in class au.csiro.netcdf.NcWriteVariable
 
getDatesByDecade(List<String>) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
Groups dates, e.g.
getDatesByDecade(List<String>) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
Groups dates, e.g.
getEndLongitudeRange() - Method in class au.csiro.netcdf.wron.LongitudeRange
 
getExistingFile(String) - Static method in class au.csiro.netcdf.util.Util
Creates a new File instance from a given pathname string, if the given pathname string exists.
getFileExtension(String) - Static method in class au.csiro.netcdf.util.Util
Method to get the file extension as a String for the supplied file name.
getGoodZone() - Method in class au.csiro.netcdf.wron.ConversionUtils
returns a TimeZone with correct Sydney daylight saving regime - ie correct server timezone.
getLatitude() - Method in class au.csiro.netcdf.wron.CellData
 
getLatitudeBlock(Set<String>, int, int) - Method in class au.csiro.netcdf.wron.ConversionUtils
Retrieve the block of latitudes to be processed.
getLimitedLatitudes(Set<String>, String, String) - Method in class au.csiro.netcdf.wron.ConversionUtils
Retrieve the latitudes within the bounds provided.
getListOfTargetFiles(String, String) - Static method in class au.csiro.netcdf.util.Util
Retrieve a list of the absolute path names of the files in a folder that match a pattern.
getLongitude() - Method in class au.csiro.netcdf.wron.CellData
 
getMemDisplay() - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
 
getMemDisplay() - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
 
getNetCDF3DataTypes() - Static method in class au.csiro.netcdf.NcDefineVariable
 
getNumLongitudes() - Method in class au.csiro.netcdf.wron.LongitudeRange
 
getNumVariables() - Method in class au.csiro.netcdf.wron.LongitudeRange
 
getStartLongitudeRange() - Method in class au.csiro.netcdf.wron.LongitudeRange
 
getUsageString() - Method in interface au.csiro.netcdf.cli.Command
 
getUsageString() - Method in class au.csiro.netcdf.NcCSVExtract
 
getUsageString() - Method in class au.csiro.netcdf.NcDefineAttributes
 
getUsageString() - Method in class au.csiro.netcdf.NcDefineDimension
 
getUsageString() - Method in class au.csiro.netcdf.NcDefineVariable
 
getUsageString() - Method in class au.csiro.netcdf.NcWriteVariable
 
getValues(int) - Method in class au.csiro.netcdf.wron.LongitudeRange
Retrieve the values for a particular variable as a string of one value per line.

H

hasMoreElements() - Method in class au.csiro.netcdf.util.CSVTokenizer
 
hasMoreTokens() - Method in class au.csiro.netcdf.util.CSVTokenizer
 

I

INPUT_DIR - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
The name of the command line option used for specifying the input directory containing the netCDF files.
INPUT_FILE - Static variable in class au.csiro.netcdf.NcCSVExtract
The name of the command line option used for specifying the input csv file name.
INPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes
The name of the command line option used for specifying the input text file name.
INPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the input text file name.
IS_FILL_VARIABLE - Static variable in class au.csiro.netcdf.NcDefineVariable
Ensure that any variable value not written will have the fill value, otherwise those values will be undefined: possibly zero, or possibly garbage.
IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes
Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.
IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineDimension
Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.
IS_LARGE_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable
Whether the netCDF file should be written with large file support, that is, 64-bit addressing for files greater than 2 GB.

L

latitude - Variable in class au.csiro.netcdf.wron.CellData
 
longitude - Variable in class au.csiro.netcdf.wron.CellData
 
LongitudeRange - Class in au.csiro.netcdf.wron
Represents a range of longitude values for some variables.
LongitudeRange(int, int, String[]) - Constructor for class au.csiro.netcdf.wron.LongitudeRange
Create a new longitude range.
lookupIndex(NetcdfFile, Dimension, String) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Lookup the index of a value in a dimension.

M

main(String[]) - Static method in class au.csiro.netcdf.cli.NetCDFTool
NetCDFTool application starting point.
main(String[]) - Static method in class au.csiro.netcdf.cli.ProduceUsageDoc
Produce the USAGE.txt document.
main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
Command line entry point for the MdbsyNetCDF2CSVConverter class.
main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
 
main(String[]) - Static method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
 
mapStringToAttributeValueList(String) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Converts a comma separated String into a String Attribute list.
mapStringToAttributeValueList(String, DataType) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Converts a comma separated String into an Attribute list.
mapStringToDataType(String) - Static method in class au.csiro.netcdf.NcDefineAttributes
Maps a String into a DataType.
MAX_32BIT_OFFSET_FILE_SIZE - Static variable in interface au.csiro.netcdf.cli.Command
The maximum file size, in bytes, before a 64-bit file offset is required.
MdbsyNetCDF2CSVConverter - Class in au.csiro.netcdf.wron
The class is a converter control class to convert Murray Darling Basin Sustainable Yields netCDF files into CSV files.
MdbsyNetCDF2CSVConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
 
MdbsyScenarioAConverter - Class in au.csiro.netcdf.wron
The class is a converter control class to convert Murray Darling Basin Sustainable Yields CSV files into netCDF files.
MdbsyScenarioAConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyScenarioAConverter
 
MdbsyScenarioAConverter.CellDataVariable - Enum in au.csiro.netcdf.wron
 
MdbsyScenarioCConverter - Class in au.csiro.netcdf.wron
The class is a converter control class to convert Murray Darling Basin Sustainable Yields CSV files into netCDF files.
MdbsyScenarioCConverter() - Constructor for class au.csiro.netcdf.wron.MdbsyScenarioCConverter
 
MdbsyScenarioCConverter.CellDataVariable - Enum in au.csiro.netcdf.wron
 

N

NC_DEFINE_ATT_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineAttributes
The command name
NC_DEFINE_DIM_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineDimension
The command name
NC_DEFINE_VAR_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcDefineVariable
The command name
NC_WRITE_VAR_COMMAND_NAME - Static variable in class au.csiro.netcdf.NcWriteVariable
The command name
NcCSVExtract - Class in au.csiro.netcdf
The ncextractcsv command reads a specified column of data from a comma separated file and then writes this column to standard output.
NcCSVExtract() - Constructor for class au.csiro.netcdf.NcCSVExtract
Constructor
NcDefineAttributes - Class in au.csiro.netcdf
The ncdefineAtt command defines global or variable Attributes in a netCDF file.
NcDefineAttributes() - Constructor for class au.csiro.netcdf.NcDefineAttributes
Constructor
NcDefineDimension - Class in au.csiro.netcdf
The ncdefineDim command defines a Dimension in a netCDF file.
NcDefineDimension() - Constructor for class au.csiro.netcdf.NcDefineDimension
Constructor
NcDefineVariable - Class in au.csiro.netcdf
The ncdefineVar command defines a Variable object in a netCDF file.
NcDefineVariable() - Constructor for class au.csiro.netcdf.NcDefineVariable
Constructor
NcWriteVariable - Class in au.csiro.netcdf
The ncwriteVar command writes a specified portion of data to a Variable object in a netCDF file.
NcWriteVariable() - Constructor for class au.csiro.netcdf.NcWriteVariable
Default constructor.
NetCDFTool - Class in au.csiro.netcdf.cli
This is the main interface for the NetCDF Tool command line application.
NetCDFTool() - Constructor for class au.csiro.netcdf.cli.NetCDFTool
 
NetCDFUtils - Class in au.csiro.netcdf.util
A collection of netCDF specific utility functions.
NetCDFUtils() - Constructor for class au.csiro.netcdf.util.NetCDFUtils
 
nextElement() - Method in class au.csiro.netcdf.util.CSVTokenizer
 
nextToken() - Method in class au.csiro.netcdf.util.CSVTokenizer
 
NOT_FOUND - Static variable in class au.csiro.netcdf.util.NetCDFUtils
Index value to be returned when the value cannot be found in the array
NULL_VALUE - Static variable in class au.csiro.netcdf.util.NetCDFUtils
 

O

OUTPUT_DIR - Static variable in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
The name of the command line option used for specifying the directory to create the csv files in.
OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineAttributes
The name of the command line option used for specifying the output netCDF file name.
OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineDimension
The name of the command line option used for specifying the output netCDF file name.
OUTPUT_FILE - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the output netCDF file name.

P

PRINT_WIDTH - Static variable in interface au.csiro.netcdf.cli.Command
The column width for printing helps and usage statements.
ProduceUsageDoc - Class in au.csiro.netcdf.cli
Produce a document with the usage instructions of the known commands.
ProduceUsageDoc() - Constructor for class au.csiro.netcdf.cli.ProduceUsageDoc
 
putValues(int, String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange
 
putValues(String, String[]) - Method in class au.csiro.netcdf.wron.LongitudeRange
 

R

readAttributesFromStream(InputStream) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Converts an input stream into an Attribute list.
readDataByLatitudes(List<CellData>, List<String>, int, int, int, String[], String) - Method in class au.csiro.netcdf.wron.ConversionUtils
Read in the data from the CSV files.
readLookupFile(File) - Static method in class au.csiro.netcdf.wron.MdbsyNetCDF2CSVConverter
Parses a csv file into an row-by-column string matrix.
reportingRegionId - Variable in class au.csiro.netcdf.wron.CellData
 

S

searchCharArray(Array, Character) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Search a netCDF Array containing character values stored in ascending order, i.e.
searchFloatingPointArray(Array, double, double) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Search a netCDF Array containing floating point numeric values (double, float) stored in ascending order.
searchIntegralArray(Array, long) - Static method in class au.csiro.netcdf.util.NetCDFUtils
Search a netCDF Array containing integer numeric values (int, long, short, byte) stored in ascending order.
setNetCDF3DataTypes(Set<DataType>) - Static method in class au.csiro.netcdf.NcDefineVariable
 
setStartLongitudeRange(String) - Method in class au.csiro.netcdf.wron.LongitudeRange
 
splitByDecade(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
Splits a directory of WRON csv files into corresponding netCDF files that are grouped by decade.
splitByDecade(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
Splits a directory of WRON csv files into corresponding netCDF files that are grouped by decade.
splitByLatitude(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioAConverter
Splits a directory of WRON csv files into corresponding netCDF files that are grouped by degrees of latitude.
splitByLatitude(String, String) - Method in class au.csiro.netcdf.wron.MdbsyScenarioCConverter
Splits a directory of WRON csv files into corresponding netCDF files that are grouped by degrees of latitude.
splitOnNonBackslashedCharacter(String, String) - Static method in class au.csiro.netcdf.util.Util
Splits the given string around matches of the given non-backslashed regular expression.
START_ROW - Static variable in class au.csiro.netcdf.NcCSVExtract
The name of the command line option used for specifying the start row.

T

tokeniseCommaSeparatedString(String) - Static method in class au.csiro.netcdf.util.Util
Splits a comma separated String into a List of tokens.
toString() - Method in class au.csiro.netcdf.NcDefineAttributes
 
toString() - Method in class au.csiro.netcdf.NcDefineDimension
 
toString() - Method in class au.csiro.netcdf.NcDefineVariable
 
toString() - Method in class au.csiro.netcdf.NcWriteVariable
 
toString() - Method in class au.csiro.netcdf.wron.CellData
 

U

Util - Class in au.csiro.netcdf.util
Util - utility class with various helpful tools...
Util() - Constructor for class au.csiro.netcdf.util.Util
 

V

validateNumber(String) - Static method in class au.csiro.netcdf.util.Util
Check if a string contains a valid number
validCommand(String[]) - Method in interface au.csiro.netcdf.cli.Command
Determine if this command is valid, check its syntax.
validCommand(String[]) - Method in class au.csiro.netcdf.NcCSVExtract
Determine if this command is valid, check its syntax.
validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineAttributes
Determine if this command is valid, check its syntax.
validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineDimension
Determine if this command is valid, check its syntax.
validCommand(String[]) - Method in class au.csiro.netcdf.NcDefineVariable
 
validCommand(String[]) - Method in class au.csiro.netcdf.NcWriteVariable
 
valueOf(String) - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioAConverter.CellDataVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioCConverter.CellDataVariable
Returns the enum constant of this type with the specified name.
values() - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioAConverter.CellDataVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum au.csiro.netcdf.wron.MdbsyScenarioCConverter.CellDataVariable
Returns an array containing the constants of this enum type, in the order they are declared.
VARIABLE_ATTRIBUTES - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the attributes of the variable.
VARIABLE_DATA_TYPE - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the data type of the variable.
VARIABLE_NAME - Static variable in class au.csiro.netcdf.NcDefineAttributes
The name of the command line option used for specifying the name of the variable receiving the attributes.
VARIABLE_NAME - Static variable in class au.csiro.netcdf.NcDefineVariable
The name of the command line option used for specifying the name of the variable.

W

writeLatDataByDecade(Map<Integer, Map<String, LongitudeRange>>, Map<Integer, String[]>, String[], Date) - Method in class au.csiro.netcdf.wron.ConversionUtils
Write out the data for each variable.

A B C D E F G H I L M N O P R S T U V W

Copyright © 2010. All Rights Reserved.